Plenty of recent articles on the M&F magazine recommend shorter workout sessions (keep it under an hour). Most people I know struggle to put 2 hrs in a gym. Especially if you want to mix cardio with it. 3 months into my training programme and my sessions are getting longer and longer! I have started to skip certain exercises due to time constraints. I rest 1 min or less between exercises/sets and still cannot finish some days on the intermediate 5-day programme.

The plans within Trainer are excellent and discipline to follow them is needed but that is difficult if you cannot follow the meal plan with the workout schedule. I am in the military and getting up early is a must and flexibility isn't always there. Most plans begin at 7:45 requiring a lot food and whey/protein intake. Is there a plan to help offset time / meal / and workout plans for individuals that do not have such flexibility in the schedule?

It seems like you are stuck with your initial options and there is no way to change them. I want to be able to modify my workouts month to month or every 6 to 8 weeks. I do like that you get an update every month on your current workout. There should also be more questions asked when trying to figure out the right workout for someone. Bodybuilding.com has a pretty decent search program for finding workouts.